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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002089m | ||||||||
Common Name | CICLE_v10002089mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31343.9 Da PI: 8.2132 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.9e-33 | 22 | 76 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Ciclev10002089m 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.455 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-32 | 19 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 22 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 22 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-9 | 24 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-19 | 122 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MERSAYVSYP YENGVMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPDKATP KSVLRLMGLK 60 GLTLYHLKSH LQKYRLGQQT RRQHGADQHK ENNGGSSFVN FYNGSLATSM TSSRGDEDQG 120 PISEALKCQA EVQQRLQEQL EVQERLQMRI EAQGKYLQAI LQKAQKSLSV DSSVTGNVNA 180 EAARDQLTTF NLAISNLMES MNEQDRKGNA TEFNDMIKKG NANGSSFRVQ GDCGEREGNE 240 GDNKHKVDGG STHFDLNTKG SYDFNGIAAN GIGLGPSTML SYN* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432631.1 | 0.0 | hypothetical protein CICLE_v10002089mg | ||||
Refseq | XP_006471438.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X3 | ||||
Swissprot | Q9SAK5 | 1e-52 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A067EUR2 | 0.0 | A0A067EUR2_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T8I9 | 0.0 | V4T8I9_9R | ||||
STRING | GLYMA01G01300.1 | 4e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12495 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-72 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002089m |
Entrez Gene | 18043024 |