PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002089m

Common Name

CICLE_v10002089mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 284aa MW: 31343.9 Da PI: 8.2132

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002089m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.9e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Ciclev10002089m 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.455	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-32	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	22	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-9	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-19	122	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MERSAYVSYP YENGVMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPDKATP KSVLRLMGLK 60 GLTLYHLKSH LQKYRLGQQT RRQHGADQHK ENNGGSSFVN FYNGSLATSM TSSRGDEDQG 120 PISEALKCQA EVQQRLQEQL EVQERLQMRI EAQGKYLQAI LQKAQKSLSV DSSVTGNVNA 180 EAARDQLTTF NLAISNLMES MNEQDRKGNA TEFNDMIKKG NANGSSFRVQ GDCGEREGNE 240 GDNKHKVDGG STHFDLNTKG SYDFNGIAAN GIGLGPSTML SYN*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432631.1	0.0	hypothetical protein CICLE_v10002089mg
Refseq	XP_006471438.1	0.0	PREDICTED: myb family transcription factor APL isoform X3
Swissprot	Q9SAK5	1e-52	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A067EUR2	0.0	A0A067EUR2_CITSI; Uncharacterized protein
TrEMBL	V4T8I9	0.0	V4T8I9_9R
STRING	GLYMA01G01300.1	4e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002089m
Entrez Gene	18043024